CloseHelpPrint
Kies de Nederlandse taal
Course module: BMB502219
BMB502219
Introduction to R for Life Sciences
Course info
Course codeBMB502219
EC3
Course goals
Objectives:
  1. getting familiar with R and Rstudio;
  2. working with data structures, objects and functions;
  3. basic flow control;
  4. importing and manipulating data;
  5. plotting data;
  6. writing (simple) functions;
  7. libraries;
  8. application of basic statistics.
Content
Period: This course is offered twice a year. First course 7 October - 18 October 2019 (BMS_P1_A) and second course 2 March - 13 March 2020 (BMS_P3_A).
 
Course description
Schedule:
The course runs for five days from approximately 9.00 till 16.00. Each day consists of a morning and afternoon session that will start with a short lecture followed by an interactive hands-on computer practical to familiarize students with R. Attendance is required at all times. A programming assignment in R is used for grading the course.

Content:
Due to technological advances in molecular biology (genomics, large-scale systems biology) research in the life sciences is becoming increasingly data rich. Currently, appropriate analyses of large-scale datasets (proteomics, genomes, Htseq, RNAseq, ChIPseq, etc) are a limiting factor. The aim of this course is to give a basic training in R for molecular biologists.
R is a widely used software environment for statistical computing and provides a wide variety of libraries for data manipulation, modeling and visualization. The course will give an introduction to R and Rstudio, an integrated development environment for R. Throughout the course you will use a single data set to take you through the basic functionality of R and Rstudio in an interactive fashion. Supplemented with several commonly used libraries, plotting and analyses routines and supporting data sets this will familiarize students with R and at the same time show the value of using R for analyzing and visualizing large amounts of data. At the beginning of the course you will be given a programming assignment that has to be handed in at the end of the course, based upon which a grade will be given.

Prerequisites knowledge
  • A good understanding of molecular biology
  • Affinity with data-driven life science research
  • Previous experience with computer programming is not required
Course material:
  • R (will be available on the provided course laptops, www.r-project.org)
  • Rstudio (will be available on the provided course laptops, www.rstudio.com)
  • Lectures, exercises and corrections handouts will be provided during the course.
Registration
You can register for this course via Osiris Student. More information about the registration procedure can be found here on the Studyguide.
CS&D and MCLS students have priority in registration,  for others registration is on 'first-come-first-serve' basis until the maximum number of 30 participants is reached.
 
Mandatory for students in Master’s programme:
No, except for students with a Bioinformatics Profile
 
Optional for students in other GSLS Master’s programme:
Yes
CloseHelpPrint
Kies de Nederlandse taal